You can never have too many spaghetti squash side dish recipes! Less than 10 minutes of active prep needed! This southwest version gets its flavor from smoky chipotle peppers and salty queso fresco.

Spaghetti squash side dish recipes are a “go to” around here. I first became smitten with this low carb squash when a good friend made this spinach and feta spaghetti squash recipe. It shook my world! Up until that point, squash was a bad word in my vocabulary. But the crunch of the al dente spaghetti squash strands changed my mind.
From there, I dove straight into the world of stuffed spaghetti squash, wooing my family over to the squash-loving world with Pesto Chicken Stuffed Spaghetti Squash and Vegetarian Enchilada Stuffed Spaghetti Squash. I even came up with a Thanksgiving leftovers version.
This easy version has a southwestern flair, thanks to a light dressing of chipotle peppers and olive oil, queso fresco (found in most grocery stores) and a good dose of minced cilantro.
What you need for this spaghetti squash side dish recipe:
These are the main components of this recipe (affiliate links included):
- Spaghetti squash: Look for a medium-sized spaghetti squash, about 3 pounds. Most grocery stores have scales in the produce section.
- Chipotle pepper: Chipotle peppers are sold in cans in adobo sauce and are typically found in the international aisle. For this recipe, you won’t need the adobo sauce, but don’t throw it out. It’s fantastic stirred into chili!
- Queso fresco: Queso fresco literally means “fresh cheese” in Spanish. In most supermarkets in the United States and Canada, it is served in a round block. Break off a piece and crumble it. It has a mild flavor with a nice hint of saltiness.
- Olive oil: Make a dressing of sorts by stirring together some olive oil with a minced chipotle pepper.
- Cilantro: Minced cilantro adds a wonderful fresh flavor to this side dish. If you’re not a fan of cilantro, use flat-leaf parsley instead.
See recipe card below for full ingredients list & recipe directions.
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Best way to cook spaghetti squash:
Preparing spaghetti squash couldn’t be easier! There are a few ways of ways to cook spaghetti squash and everyone seems to have their favorite.
Roasted or baked spaghetti squash
This is the favorite method of most cooks. It can be roasted whole or in halves, though I have the best results when the squash is cut in half and placed face down on a rimmed baking sheet. Scoop out the seeds first, rub the inside of the squash with olive oil and season it, then bake it cut side down in a 400 degree F oven for about 45 minutes.
In the microwave:
I admit that on busy nights, I often take the lazy route and microwave spaghetti squash. It produces surprisingly good results! Pierce the squash over with the tip of a sharp knife. Cook it in the microwave, turning halfway through. The cooking time will vary slightly dependent on the strength of your microwave. In my XX watt microwave, a 3-pound spaghetti squash typically cooks in about 12 minutes.
Once it’s cool enough to handle, cut the spaghetti squash using a large sharp knife. Scoop out and discard the seeds, then use a fork to scrape and twirl out the strands.
In rings:
Why rings? You’ll get the longest strands of spaghetti squash. Using a large, sharp knife, cut the spaghetti squash into rings. Scoop out the seeds, brush both sides with olive oil (and season!) and place the rings on a baking sheet. Roast for about 40 minutes.
What to serve with this spaghetti squash side dish:
Serve it on the side of any southwestern or Mexican-inspired dishes. Here are a few of our favorites:
- Ground Turkey Enchilada Skillet Meal
- Southwest Ground Turkey Soup (Instant Pot)
- Southwestern Turkey Rice Casserole
- Salmon Tostadas
- Healthy White Chicken Chili
Frequently Asked Questions:
Yes! Let the spaghetti squash dish cool, then transfer to an airtight container. Store it in the fridge for up to 3 to 4 days.
There aren’t many ways to mess up this dish. Except for overcooking the spaghettis squash! When overcooked, the spaghetti squash strands become unpleasantly mushy and loses that fresh al dente texture that makes spaghetti squash so wonderful.
When cooking spaghetti squash whole, the skin should have a small amount of “give” when you press it. If the skin is collapsing inwards significantly, the squash is likely overcooked.
Queso fresco has a very mild flavor, but this dish is very versatile so a bolder cheese would work, too. Try cotija, feta or ricotta cheeses.
Spaghetti squash season typically beings in early fall and extends through the winter. Look for squash that are yellow and firm. Soft spots are a dealbreaker, so set those squash aside.
Printable Recipe
Southwest Spaghetti Squash Side Dish
Ingredients
- 1 (3 pound) spaghetti squash
- 1 chipotle pepper seeded & minced (See Note 1)
- 2 tablespoons extra virgin olive oil
- ½ cup crumbled queso fresco (See Note 2)
- 3 tablespoons minced cilantro
- ½ teaspoon kosher salt (See Note 3)
- ¼ teaspoon ground pepper
Instructions
- Using a large, sharp knife, pierce the spaghetti squash in several places.
- Place the spaghetti squash in a glass baking dish and cook in the microwave on high for 12 to 15 minutes (depending on the wattage of your microwave), turning the squash halfway through cooking. The skin should just have a bit of “give” when pressed. If it is collapsing inwards significantly, the squash is likely overcooked.
- Before handling, let the squash stand for 10 minutes. Cut it in half lengthwise and scrape out the seeds and fibers. Using a fork, twist out strands of the spaghetti squash flesh and place in a large bowl.
- Place the chopped chipotle peppers in a small bowl and whisk in olive oil. Pour the olive oil mixture into the spaghetti squash and toss until combined.
- Add queso fresco cheese, cilantro, salt, and pepper to the spaghetti squash and toss again. Serve.
Notes
Nutrition
This post was first published on September 21, 2010. It was updated with new photos, tips and text on September 30, 2021.
Disclosure: I am a participant in the Amazon Services LLC Associates Program, an affiliate advertising program designed to provide a means for me to earn fees by linking to Amazon.com and affiliated sites.
Aggie
holy deliciousness! I love spaghetti squash. what a great way to serve it up!
SMITH BITES
OMG - TOTALLY SWOON-WORTHY!! I'm in love with Spaghetti Squash and am always looking for ways to use it - this is terrific!
Amanda
That looks marvelous, and those plates are gorgeous!
Megan
I have never seen spaghetti squash look so inviting!
Love the new look too and I cant wait to meet ya in SF! 🙂
marla {family fresh cooking}
I actually much prefer spaghetti squash to traditional pasta. Love that it is guilt free, full of flavor & can take on so many different sauces, cheeses etc. Dara, thanks for this gorgeous recipe. I am so happy it is squash season 🙂 xo
Nancy
Have to say I've never been a fan of spaghetti squash but after reading this I am reconsidering!!
Great recipe and beautiful photos as always!
Tracy
This looks delicious! I'll keep it in mind if I get spaghetti squash from our CSA!
Drick
what a great recipe - love the flavors going on in this one ... my favorite
Spicie Foodie
Oh my, this looks absolutely delicious! I love the ingredient combination- just perfect.
Lauren
Ok call me dumb, but until this post in never realised that a spaghetti squash was more than just chopped thinly slices of squash. It's an entirely different thing?!
Wow, thanks for teaching me something new today!
Carolyn
Love this idea, what a great way to spice up spaghetti squash!
madge @ vegetariancasserolequeen
Beautiful - the dish and your writing! I can't wait to get my hands on a spaghetti squash.
Lori Lynn
What a lovely Fall dish. I like the smoky heat too.
LL
Suzanne aka vivisue
I love spaghetti squash! My husband, not so much, but that just leaves more for me. However, with a "southwestern flair", I think he can be sold! This looks wonderful. Excellent post!
Kalyn
This sounds so good. I have spaghetti squash from my garden and haven't cooked even one yet!
Barbara | VinoLuciStyle
You had me at Queso Fresco; I've recently fallen in love with this cheese and how perfectly it works in conjunction with some heat; adding them together with winter squash? Priceless!
chris
ooooh! Spaghetti squash is amazing. Then, add SW spin, chipotle peppers and all? *Swoon*
Can't wait to try it!